| Pos. | No. | Team | Type | Rider | Time | ||
| 1 | 51 | WT | Bulldog Tagos & Green Breeze | Ninja250R | Takahiro Sato / Yasuo Ushigome / Kenichi Taguchi / Takahiko Kadowaki | 5'08.817 | |
| 2 | 16 | WT | nekomata-RT | Spada | ◎Masahiro Hori / Tomoyuki Taguchi / Yutaka Furusho | 5'08.876 | |
| 3 | 58 | WT | MKT Racing over 40S | Ninja250R | ◎ Hiroyasu Maruyama / Masafumi Kurata / Hiroaki Takigawa | 5'09.099 | |
| 4 | 79 | WT | Honda Shop Nagano & Weak Boy | VTR | ◎ Toshiki Shinohara / Minoru Toida / Kyota Takeuchi / Yoichi Ariga | 5'09.434 | |
| 5 | 46 | WT | Kito Kito RT Mande Gan | VTZ250 | Matsuda Taira / Nakazaki Shin / ◎ Kondo Hajime | 5'09.446 | |
| 6 | 48 | WT | Bulldozer Tagos Jockeys | Ninja250R | ◎ Kenichi Inoue / Masato Matsui / Wataru Kitazume / Ken Yoshida | 5'10.342 | |
| 7 | 5 | WT | GG4 & Kushitani Utsunomiya | VTR | Naoshi Masuyama / Yoshio Masuyama / ◎ Yuta Kobayashi | 5'10.443 | |
| 8 | 96 | WT | Amanojaku & Machine Head | ZX250RR (ZZR250) | ◎Yoshinobu Oda / Taro Yatsu / Masahiro Takano | 5'11.092 | |
| 9 | 18 | WT | Dream Kounosu & Ebi Den | VTR250 | ◎ Sato Hōfuku / Kazutaka Kuwana / Hiroyuki Itō / Hideo Iida | 5'11.155 | |
| 10 | 82 | WT | Garage Mas | VT250 Spada | Hiroyuki Osawa / Takashi Yoshida / ◎Mihiro Masutani | 5'11.296 | |
| 11 | 90 | WT | Amanojaku & F. KONDO | GPZ Spada R | ◎Masahiko Hirano / Koji Kawaida / Sanae Iizuka | 5'13.047 | |
| 12 | 9 | WT | Onoue Service | Ninja250R | ◎Tadanori Onoue / Tsuyoshi Tanaka / Koji Takahashi | 5'14.169 | |
| 13 | 62 | WT | Team HAPPY RIDERS Regulars | VT250 Spada | ◎ Yoshinobu Suzuki / Daisuke Matsui / Yoshio Goto | 5'15.714 | |
| 14 | 41 | WT | MotoYoshi Twins 4 | Ninja250 | Hiroshi Motoyoshi / Katsutoshi Ishigami / Risa Nishimura / ◎ Katsunori Hasegawa | 5'18.750 | |
| 15 | 15 | WT | WITHME 250 | VT250 Spada | ◎Masaki Wakai / Takachi Koizumi / Yuki Yoshida | 5'19.985 | |
| 16 | 75 | AS1 | NSBR↓↑50 | CBX250S | ◎Osamu Shigeno / Nobuya Sasaki / Shigenori Ginto / Kenichi Nagashima | 5'21.571 | |
| 17 | 26 | AS1 | River's☆Air-Cooled Ski | SRX250 | ◎Kazuyuki Toyama / Naomi Saito / Hiroshi Saito | 5'21.648 | |
| 18 | 35 | WT | Okamoto Racing | VTR250 | Kohei Sekiguchi / Hideo Omata / Akihiko Okamoto | 5'21.890 | |
| 19 | 61 | WT | SBKJapan.com | VT250 Spada | K.STANTON/◎C.HOUSING/ A.FAULKNER/ A.LUNDQUIST | 5'23.264 | |
| 20 | 85 | WT | Rear Exhaust Friends Association VT Group | VT250F | Akito Ohashi / Kenichiro Kamei / Akira Miyamoto | 5'31.180 | |
| 21 | 37 | AS1 | T.T.MOTO | SRX250 | ◎Yasuhiro Takayama / Masayuki Sawamura / Daisuke Kurashina | 5'31.515 | |
| 22 | 29 | WT | Build Works & ARMADA | VT250 Spada | ◎Funabashi One person / Kyujo Yuki / Sakai Yukio / Yasukawa Sumie | 2'33.763 |