| Pos | No. | Gr | Name | Time | Delay | @Best | Best | Type | Car Name/Team | ||
| 1 | 25 | Masamichi Higashiura | 1'56.962 | 147.78Km/h | ● 1'56.962 | Did not start | YZF-R6 | Plus Mue Racing Team | |||
| 2 | 5 | Koji Teramoto | 1'57.614 | 0.652 | ● 1'57.614 | 2'14.640 | GSX-R600K7 | Moto Map VEGA | |||
| 3 | 88 | Yuichi Takeda | 1'57.679 | 0.717 | ● 1'57.679 | Did not start | CBR600RR | Team Sakurai Honda | |||
| 4 | 73 | Yoshiki Konishi | 1'57.688 | 0.726 | ● 1'57.688 | Did not start | CBR600RR | team HARC-PRO. | |||
| 5 | 6 | Masao Okuno | 1'57.860 | 0.898 | ● 1'57.860 | Did not start | YZF-R6 | Ito Racing GMD Suzuka | |||
| 6 | 55 | Eki Takahashi | 1'58.056 | 1.094 | ● 1'58.056 | 2'27.911 | CBR600RR | DyDo MiU Racing | |||
| 7 | 12 | Hiroki Noda | 1'58.072 | 1.110 | ● 1'58.072 | Did not start | CBR600RR | Racing Team Honey Bee | |||
| 8 | 705 | Takehiko Kurokawa | 1'58.125 | 1.163 | ● 1'58.125 | Did not start | CBR600RR | GARAGESPEED Nakamura Eg | |||
| 9 | 10 | Yuji Sato | 1'58.164 | 1.202 | ● 1'58.164 | 2'12.251 | YZF-R6 | Jubilo Racing Team | |||
| 10 | 16 | Masahiko Oishi | 1'58.172 | 1.210 | ● 1'58.172 | 2'24.671 | YZF-R6 | Ito Racing GMD Suzuka | |||
| 11 | 8 | Eirin Takahashi | 1'58.257 | 1.295 | ● 1'58.257 | 2'12.988 | ZX-6R | TEAM GREEN | |||
| 12 | 45 | Mitsuo Izumi | 1'58.383 | 1.421 | ● 1'58.383 | Did not start | CBR600RR | Honda Dream Kitakyushu RT | |||
| 13 | 72 | Atsushi Miyazaki | 1'58.474 | 1.512 | ● 1'58.474 | Did not start | YZF-R6 | DOG FIGHT RACING | |||
| 14 | 15 | Makoto Inagaki | 1'58.510 | 1.548 | ● 1'58.510 | Did not start | CBR600RR | Burning Blood RT | |||
| 15 | 43 | Hideyuki Namakata | 1'58.544 | 1.582 | ● 1'58.544 | Did not start | GSX-R600 | Espulse Dream Racing | |||
| 16 | 58 | Takayuki Oki | 1'58.596 | 1.634 | ● 1'58.596 | Did not start | CBR600RR | Club HARC-PRO. | |||
| 17 | 20 | Satoru Iwata | 1'58.632 | 1.670 | ● 1'58.632 | 2'18.074 | CBR600RR | F.C.C.TSR | |||
| 18 | 17 | Toshiyuki Arakaki | 1'58.827 | 1.865 | ● 1'58.827 | Did not start | CBR600RR | Team ARA Tiger's Den | |||
| 19 | 51 | Maki Izumimoto | 1'58.852 | 1.890 | ● 1'58.852 | Did not start | YZF-R6 | RT Bear in the Forest Sato Juku Sendai | |||
| 20 | 54 | Tetsugo Inoue | 1'59.077 | 2.115 | ● 1'59.077 | 2'16.878 | ZX-6R | TrickStar Tamiton-R | |||
| 21 | 11 | Mori Shin | 1'59.177 | 2.215 | ● 1'59.177 | Did not start | CBR600RR | team HARC-PRO. | |||
| 22 | 44 | Yuta Kodama | 1'59.245 | 2.283 | ● 1'59.245 | Did not start | CBR600RR | DDBOYS Racing | |||
| 23 | 37 | Tomoki Yukue | 1'59.453 | 2.491 | ● 1'59.453 | 2'14.409 | GSX-R600 | Yoshimura Suzuki with JOMO | |||
| 24 | 27 | Shintaro Nakayama | 1'59.523 | 2.561 | ● 1'59.523 | 2'16.749 | CBR600RR | Kohara RC | |||
| 25 | 89 | Summa Sadahito | 1'59.617 | 2.655 | ● 1'59.617 | Did not start | CBR600RR | Honda Dream Kitakyushu RT | |||
| 26 | 76 | Naoki Shimizu | 1'59.624 | 2.662 | ● 1'59.624 | 2'23.350 | ZX-6R | RS-ITOH&KAZE | |||
| 27 | 23 | Noriharu Numata | 1'59.669 | 2.707 | ● 1'59.669 | Did not start | YZF-R6 | HITMAN RC Koshien Yamaha | |||
| 28 | 56 | Takashi Harada | 1'59.768 | 2.806 | ● 1'59.768 | Did not start | CBR600RR | CLUB HARC-PRO. | |||
| 29 | 34 | Hidemitsu Kawahara | 1'59.791 | 2.829 | ● 1'59.791 | Did not start | CBR600RR | TEAM PLUS ONE | |||
| 30 | 29 | Takuya Tsuda | 1'59.839 | 2.877 | ● 1'59.839 | 2'14.945 | CBR600RR | Team OSG & Motorsports | |||
| 31 | 62 | Naohiro Nakatsuhara | 1'59.841 | 2.879 | ● 1'59.841 | Did not start | CBR600RR | Kenyuukai Tochigi PG Racing | |||
| 32 | 85 | Daisuke Nakajima | 1'59.916 | 2.954 | ● 1'59.916 | Did not start | ZX-6R | MAX-SPEED | |||
| 33 | 28 | Ikumi Shimizu | 2'00.044 | 3.082 | ● 2'00.044 | Did not start | CBR600RR | DREAM Takasaki B'WISE RT | |||
| 34 | 69 | Ryuta Kobayashi | 2'00.257 | 3.295 | ● 2'00.257 | 2'19.836 | CBR600RR | Burning Blood RT | |||
| 35 | 65 | Takahiro Kosuge | 2'00.274 | 3.312 | ● 2'00.274 | Did not start | CBR600RR | CLUB HARC-PRO. | |||
| 36 | 99 | Naoko Takasugi | 2'00.464 | 3.502 | ● 2'00.464 | Did not start | CBR600RR | Racing Team Honey Bee | |||
| 37 | 33 | Shingo Shimaji | 2'00.544 | 3.582 | ● 2'00.544 | 2'20.945 | ZX-6RR | Ambitious Panasonic LUMIX | |||
| 38 | 60 | Hiroshi Kobayashi | 2'01.007 | 4.045 | ● 2'01.007 | Did not start | CBR600RR | R.T Honey Bee Matsuda School | |||
| 39 | 57 | Yokobari Yoshikatsu | 2'01.026 | 4.064 | ● 2'01.026 | Did not start | GSX-R600 | SBS Iwata | |||
| 40 | 63 | Yoshihiro Kishimoto | 2'01.472 | 4.510 | ● 2'01.472 | Did not start | CBR600RR | Yokohama F. Marinos & Ozawa R&D + Matsuda School | |||
| Qualified vehicles: | |||||||||||
| 41 | 83 | Teru Oono | 2'01.612 | 4.650 | ● 2'01.612 | Did not start | GSX-R600 | SBS Aizu Light On | |||
| 42 | 77 | Shigenobu Oda | 2'01.869 | 4.907 | ● 2'01.869 | Did not start | CBR600RR | Honda Shop Nagano R.T | |||
| 43 | 59 | Takaichi Akabane | 2'03.026 | 6.064 | ● 2'03.026 | Did not start | CBR600RR | ||||
| 44 | 38 | Yoshikazu Anami | 2'03.097 | 6.135 | ● 2'03.097 | Did not start | YZF-R6 | DOG FIGHT RACING | |||
| 45 | 91 | Daniel Silva | 2'03.870 | 6.908 | ● 2'03.870 | 2'17.937 | GSX-R600K6 | Kentz J Trust Racing | |||
| 19 | Ryuji Tsuruta | Did not start | Did not start | Did not start | ZX-6R | TrickStar Tamiton-R | |||||
| 61 | Yasutaka Kojima | Did not start | Did not start | Did not start | CBR600RR | MC Racing | |||||